PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00067176001
Common NameGSBRNA2T00067176001, LOC106422334
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 343aa    MW: 38108.7 Da    PI: 7.2891
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00067176001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702220.82.8e-681132783154
               DUF702   3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel.........ksk 81 
                           g+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrer +q+a++++++a+s+  ++a++kr re          +s 
  GSBRNA2T00067176001 113 LGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQHASLQHHSATSRetQNAKAKRLREAnggdnddkdRSG 202
                          6899*****************************************************999999884433344444444777777766667 PP

               DUF702  82 kqsalsstklssaeskkeletss.lPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                           + ++ +t+l++a+s++ +  s+ lP+evss+a+frcvrvss+++  +e+e+aYqtav+igGhvfkGiLydqGl++
  GSBRNA2T00067176001 203 GSGSALATRLVNANSNSGFGESQnLPPEVSSPAIFRCVRVSSMENdeDEQEYAYQTAVNIGGHVFKGILYDQGLDQ 278
                          778888999999999999876655*******************98434556**********************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051425.0E-63115277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.6E-27117159IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016248.8E-26227276IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAGFFYLGGR DNINNKQDHH HVDKDHHQQD KSNYLYLYKD EIYNTNKGFE IWPPQYFQQQ  60
QEQQQHHVTA STNLYSFGMV PSSSNNNNNN RSRSLYFNVV SDHEPGGFSV TRLGGMNCQD  120
CGNQAKKDCP HLRCRTCCKS RGFHCQTHVK STWVPAAKRR ERLAQHASLQ HHSATSRETQ  180
NAKAKRLREA NGGDNDDKDR SGGSGSALAT RLVNANSNSG FGESQNLPPE VSSPAIFRCV  240
RVSSMENDED EQEYAYQTAV NIGGHVFKGI LYDQGLDQDH HHQLDLLAST ATTTNAEEIA  300
AKTAVTVAAN TNNGLMIDPS SLYPSQLNSF IAGTPFFTPP RS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292010.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00067176001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013718596.10.0PREDICTED: protein SHI RELATED SEQUENCE 5-like
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078HNU40.0A0A078HNU4_BRANA; BnaA02g17280D protein
STRINGBra008203.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-153SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]